Personal site and technical notebook
Writing about algorithms, systems, implementation details, and the parts of software work worth keeping around.
Latest posts
Projects, technical ideas, and implementation notes.
In this quick tutorial, I will share how to install Julia language on a Mac computer, setup symlinks to run it from command line and then will go through a couple of problems in probability and their Julia language simulations.
We are going to install …
In this post I will present a tutorial on a Julia package called StructuralIdentifiability.jl which I help maintain and contribute to. In the next post I will present a similar introduction to another package I help develop called SIAN.jl, but that's for another time.
This tutorial will be …
Over the course of the summer, my work resulted in successfully ported code of
StructuralIdentifiability.jl, a package that can help researchers who use
ordinary differential equations in their work. The package allows answering
queries about individual identifiability of parameters and their combinations.
The StructuralIdentifiability.jl package is ready to …
We slightly churned our project idea from the original algorithm implementation into an inclusion of a StructuralIdentifiability.jl package develop by my colleague Gleb Pogudin. The package is currently part of SciML with more updates to come!
Here is a list of things it can do:
In this repository, I will describe our recently-released Structural Identifiability Toolbox, a web-based application for assessing parameter identifiability of differential models.
Click here to checkout the application! Read on to learn more.
The program is fast, free, and is available in any web-browser, including mobile …
The problem of parameter identifiability is one of the most crucial issues arising in systems biology. To take a look at a problem of identifiability, we must first describe a setting in which it arises. Systems biology deals with biological processes that are described by …
In this short post, I wanted to point out one interesting application of regular expressions I had to work on for my PhD research project. The code was meant as a technical tool to help tranlate some ordingary differential equation models from numerical (Matlab) to symbolic (Maple) code.
In this post, I expand on a little class/self-teaching project that I did during the Spring 2020 semester.
In this section we will discuss the main organization of the library:
In this post, I put together an interesting example of what to do with imbalanced datasets and why precision and recall matter.
The following is part of a Machine learning assignment I had to do while at CUNY. This particular example illustrates quite well the importance of understanding various …
In this post I wanted to describe a simple application of a linear least squares method to a problem of data classification. It is a naive approach and is unlikely to beat more sophisticated techniques like Logistic Regression, for instance.
Some imports we are going to need for this …